As filed with the Securities and Exchange Commission on January 16, 2002



                                                      Registration No. 333-74100

================================================================================

                       SECURITIES AND EXCHANGE COMMISSION
                             Washington, D.C. 20549

                                 --------------


                               Amendment No. 1 to

                         Form S-3 Registration Statement
                        Under the Securities Act of 1933

                                 --------------

                                    CRAY INC.
             (Exact name of registrant as specified in its charter)

                                 --------------

                WASHINGTON                                  93-0962605
      (State or other jurisdiction                        (IRS Employer
    of incorporation or organization)                   Identification No.)

                             411 First Avenue South
                                    Suite 600
                                Seattle, WA 98104
                           (206) 701-2000 (telephone)
                           (206) 701-2500 (facsimile)
       (Address, including zip code, and telephone and facsimile numbers,
              including area code, of principal executive offices)


                                 --------------

                   Kenneth W. Johnson, Chief Financial Officer
                                    Cray Inc.
                             411 First Avenue South
                                    Suite 600
                                Seattle, WA 98104
                           (206) 701-2000 (telephone)
                           (206) 701-2500 (facsimile)
                (Name, address, including zip code, and telephone
        and facsimile numbers, including area code, of agent for service)

                                    Copy to:
                             L. John Stevenson, Jr.
                                 Stoel Rives LLP
                          One Union Square, 36th Floor
                             Seattle, WA 98101-3197
                           (206) 624-0900 (telephone)
                           (206) 386-7500 (facsimile)

        Approximate date of commencement of proposed sale to the public:
      From time to time after this registration statement becomes effective

If the only securities being registered on this Form are to be offered pursuant
to dividend or interest reinvestment plans, please check the following box. [ ]

If any of the securities being registered on this Form are to be offered on a
delayed or continuous basis pursuant to Rule 415 under the Securities Act of
1933, other than securities offered only in connection with a dividend or
interest reinvestment plan, check the following box. [X]

If this Form is filed to register additional securities for an offering pursuant
to Rule 462(b) under the Securities Act, please check the following box and list
the Securities Act registration statement number of the earlier effective
registration statement for the same offering. [ ]




If this Form is a post-effective amendment filed pursuant to Rule 462(c) under
the Securities Act, check the following box and list the Securities Act
registration number of the earlier effective registration statement for the same
offering. [ ]

If delivery of the prospectus is expected to be made pursuant to Rule 434,
please check the following box. [ ]





The registrant hereby amends this registration statement on such date or dates
as may be necessary to delay its effective date until the registrant shall file
a further amendment which specifically states that this registration statement
shall thereafter become effective in accordance with section 8(a) of the
Securities Act of 1933 or until the registration statement shall become
effective on such date as the Securities and Exchange Commission, acting
pursuant to said section 8(a), may determine.





PROSPECTUS, Subject to Completion, dated January 16, 2002



                                    CRAY INC.

                        8,282,484 shares of common stock

        These shares of common stock are issuable upon conversion of, or as
payment of interest on, the 5% convertible subordinated debentures, shares
issuable for other payments due under the debentures and related transaction
documents, and shares issuable upon exercise of the stock purchase warrants
owned by the selling shareholders listed on page 3.

        The selling shareholders may sell the shares from time to time at fixed
prices, market prices, prices computed with formulas based on market prices, or
at negotiated prices, and may engage a broker or dealer to sell the shares. We
will not receive any proceeds from the sale of the shares, but we will bear the
costs relating to the registration of the shares.


        Our common stock is traded on the Nasdaq National Market under the
symbol "CRAY." On January 15, 2002, the closing price for our common stock was
$2.30 per share.


                                 --------------

        THE SHARES OFFERED IN THIS PROSPECTUS INVOLVE A HIGH DEGREE OF RISK. YOU
SHOULD CAREFULLY CONSIDER THE "FACTORS THAT COULD AFFECT FUTURE RESULTS"
CONTAINED IN OUR QUARTERLY REPORT ON FORM 10-Q FOR THE QUARTER ENDING SEPTEMBER
30, 2001, THE "ADDITIONAL FACTORS THAT COULD AFFECT FUTURE RESULTS" IN OUR
CURRENT REPORT ON FORM 8-K FILED ON NOVEMBER 28, 2001, AND SIMILAR DISCLOSURES
IN OUR FUTURE FILINGS MADE WITH THE SECURITIES AND EXCHANGE COMMISSION, WHICH
ARE INCORPORATED BY REFERENCE IN THIS PROSPECTUS, IN DETERMINING WHETHER TO
PURCHASE SHARES OF OUR COMMON STOCK.

                                 --------------

NEITHER THE SECURITIES AND EXCHANGE COMMISSION NOR ANY STATE SECURITIES
COMMISSION HAS APPROVED OR DISAPPROVED THE SHARES, OR DETERMINED IF THIS
PROSPECTUS IS TRUTHFUL OR COMPLETE. ANY REPRESENTATION TO THE CONTRARY IS A
CRIMINAL OFFENSE.

                                 --------------


               The date of this prospectus is ____________, 2002.





                                TABLE OF CONTENTS




       Section                                                               Page
       -------                                                               ----
                                                                          
       Our Business.....................................................       3
       Selling Shareholders ............................................       3
       Plan of Distribution ............................................       6
       Legal Matters ...................................................       7
       Experts .........................................................       7
       Limitation of Liability and Indemnification .....................       7
       Information Incorporated by Reference ...........................       7
       Available Information ...........................................       8




        You should rely only on information contained or incorporated by
reference in this prospectus. See "Information Incorporated by Reference" on
page 7. Neither Cray nor the selling shareholders have authorized any other
person to provide you with information different from that contained in this
prospectus.

        The shares of common stock are not being offered in any jurisdiction
where the offering is not permitted.






                                      -2-


                                  OUR BUSINESS

        We design, build, sell and service high-performance computer systems,
sometimes referred to as "supercomputers." Our executive offices are located at
Merrill Place, Suite 600, 411 First Avenue South, Seattle, WA 98104-2860, and
our telephone number is (206) 701-2000.


                              SELLING SHAREHOLDERS


        Shares Offered by the Selling Shareholders. On November 6 and 15, 2001,
in a private placement under the Securities Act, we sold to six accredited
investors (i) 5% convertible subordinated debentures in the aggregate original
principal amount of $9,300,000, convertible into shares of our common stock and
(ii) stock purchase warrants for an aggregate of 367,590 shares of our common
stock at an initial exercise price of $4.4275 per share, subject to adjustment,
exercisable until November 6, 2004. The purchasers were the six selling
shareholders listed in the table below. We received gross proceeds of $9,300,000
in exchange for the issuance of the debentures and the warrants, and after
payment of expenses we expect net proceeds of approximately $8,550,000. The
selling shareholders are offering for resale pursuant to this prospectus shares
of common stock issuable to them upon conversion of, or as payment of interest
on, the debentures, for other payments due under the debentures and related
transaction documents, and upon exercise of the warrants. The material terms of
the debentures and the warrants are described below.





                                                                   Ownership After Offering
                              Shares Owned                           if All Shares Offered
                               Prior to          Shares Being            Hereby Are Sold
Selling Shareholders          Offering(1)         Offered(2)       Shares            Percent
--------------------          -----------        ------------      ------            -------
                                                                         
Riverview Group, LLC(3)         4,452,947          4,452,947          0                  0

Omicron Partners, LP(4)         1,781,180          1,781,180          0                  0

Laterman & Co.(5)                 445,295           445,295           0                  0

Forevergreen Partners(5)          445,295           445,295           0                  0

Clarion Capital                   890,590           890,590           0                  0
Corporation(6)

The Morton A. Cohen               267,177           267,177           0                  0
Revocable Living Trust(6)



--------------
(1)  Assumes a total of (i) 7,914,894 shares issuable upon conversion of the
     convertible debentures (calculated as 200% of the shares issuable using the
     fixed conversion price of $2.35 per share); and (ii) 367,590 shares of
     common stock issuable upon exercise of the warrants.

(2)  Represents the number of shares issuable upon conversion of the convertible
     subordinated debentures, in any payment of interest made on the debentures
     in shares of common stock, for any other payments due under the debentures
     and related transaction documents, and upon exercise of the warrants
     calculated as described in note (1) above. The actual number of shares of
     common stock issued upon the conversion of the convertible subordinated
     debentures and the payment of interest thereon depends on factors which we
     cannot predict at this time, including the times at which the selling
     shareholders may elect to convert the debentures and the market prices of
     our common stock at such times.


(3)  The Chief Financial Officer of Riverview, who is currently Robert Williams,
     has voting and dispositive power over the shares to be sold by Riverview.



(4)  Omicron Capital, L.P., a Delaware limited partnership ("Omicron Capital"),
     serves as subadvisor to Omicron Partners, L.P., a Bahamas limited
     partnership ("Omicron"), and Grove Management Limited ("Grove") is the
     general partner of Omicron. By reason of such relationships, Omicron
     Capital may be deemed to share dispositive power over the shares of common
     stock owned by





                                      -3-



     Omicron and Grove may be deemed to share voting and dispositive power over
     the shares of common stock owned by Omicron. Omicron Capital and Grove
     disclaim beneficial ownership of such shares of common stock. Omicron and
     Grove are not "affiliates" of one another, as that term is used for
     purposes of the Securities Exchange Act of 1934, as amended, or of any
     other person named in this prospectus as a selling shareholder. No person
     or "group" (as that term is used in Section 13(d) of the Securities
     Exchange Act of 1934, as amended, or Regulation 13D-G promulgated
     thereunder) controls Omicron and Grove.



(5)  Bernard Laterman, Managing Partner of Laterman & Co. and Forevergreen
     Partners, has voting and dispositive power over the shares to be sold by
     those entities.



(6)  Morton A. Cohen has voting and dispositive power over the shares to be sold
     by Clarion Capital Corporation and The Morton A. Cohen Revocable Living
     Trust.


        None of the selling shareholders has had any material relationship with
us or any of our affiliates within the past three years.

        In recognition of the fact that each selling shareholder may wish to be
legally permitted to sell its shares when it deems appropriate, we have agreed
with the selling shareholders to file with the SEC, under the Securities Act of
1933, a registration statement on Form S-3, of which this prospectus forms a
part, with respect to the resale of the shares, and we have agreed to prepare
and file such amendments and supplements to the registration statement as may be
necessary to keep the registration statement effective until the shares are no
longer required to be registered for sale by the selling shareholders.


        Description of the Debentures. The debentures bear interest at the rate
of 5% per year, payable semi-annually commencing May 6, 2002. We can elect to
pay interest in cash or in shares of our common stock. The debentures mature on
November 6, 2004.



        The holders of the debentures can choose to convert all or a portion of
the principal amount outstanding into shares of our common stock at any time
before the maturity date of November 6, 2004. The debentures are convertible
into common stock at a fixed conversion price of $2.35 per share from the date
of issuance until maturity. In addition, during each three-month period
beginning on February 6, 2002, each holder may convert on a cumulative basis up
to 25% of the original principal amount of each holder's debenture at a floating
conversion price. The floating conversion price is equal to 94% of the average
of the 7 lowest daily volume weighted average prices during the 20 trading days
immediately prior to the date upon which the debenture is converted.



        On the maturity date of November 6, 2004, the holders are obligated to
convert any remaining principal into common stock at a conversion price equal to
the average of the closing prices during the 15 trading days immediately prior
to the maturity date.



        The debentures contain subordination provisions in favor of our senior
secured lender, which limit our rights and obligations to make cash payments of
principal, interest or other payments of funds under the debentures and related
transaction documents.



        We are not required to issue to the debenture holders in excess of
8,422,204 shares below the market price of our common stock in accordance with
Nasdaq rules, or such greater number of shares permitted under Nasdaq Rule
4350(i). In such event, the debenture holders may elect to require us to convert
the debentures at the lowest possible conversion price that complies with Nasdaq
rules or to redeem the portion of the debentures which were not able to be
converted by payment of 105% of the outstanding principal, plus accrued
interest, if the redemption were by May 6, 2002, or of 110% of the outstanding
principal, plus accrued interest, if the redemption were after May 6, 2002,
provided that we are not obligated to redeem more than 25% of the original
principal amount of the debentures every three months on a cumulative basis
beginning on February 6, 2002.



        A debenture holder may not convert its debenture or receive shares of
our common stock as payment of interest to the extent that, at the time of the
conversion or payment, the sum of (i) the number of shares of our common stock
beneficially owned by the holder plus (ii) the number of shares to be issued
upon conversion and payment would exceed 4.999% of the number of shares of our
common stock then issued and outstanding, including other shares of our common
stock issuable upon conversion of, or payment of interest on, the holder's
debenture. The holder may terminate this restriction upon 61 days' prior notice
to us.





                                      -4-



        In the event that we sell any shares of our common stock (or certain
securities convertible into or exercisable for shares of our common stock) at a
price less than the fixed conversion price of the debentures, then the fixed
conversion price of the debentures generally shall be reduced based on a
weighted average adjustment (subject to certain exceptions). The debentures also
contain customary antidilution provisions for stock dividends, stock splits or
combinations and reclassifications.



        In the event that a debenture is converted and we issue the shares of
common stock later than the time permitted in the debenture, we may be required
to make late fee payments to the holder that increase based upon how late we
issue the shares and without a limit on the late fee that must be paid. The
debentures provide that, if we deny, or if any of our shareholders obtain a
judgment denying, the rights of the holders to convert the debentures, then the
holders have the right to require us to pay 120% of the outstanding principal
amount of the debentures plus accrued and unpaid interest.



        If an event of default occurs under the debentures, the holders have the
right to require us to pay a mandatory redemption amount, subject to the
subordination provisions of the debentures in favor of our senior secured
lender. The mandatory redemption amount is the greater of (i) 120% of the
outstanding principal on the debentures, plus accrued interest or (ii) the
outstanding principal amount, plus accrued interest, divided by the applicable
conversion price, and multiplied by the closing price of our common stock on the
applicable date provided in the debentures.



        The events of default include: (i) failure to pay scheduled principal or
interest payments, (ii) breach of any material representation or warranty in the
debentures or the related transaction agreements, (iii) failure to timely issue
shares upon conversion of the debentures, to timely transfer such issued shares
or to timely remove restrictive legends if lawful and required by the debentures
and the related agreements, which failure continues uncured for ten trading
days, (vi) failure to perform our obligations in the debentures or related
agreements for a period of 20 business days after notice, (vii) commencement of
bankruptcy or insolvency proceedings or appointment of a receiver or similar
assumption of control of a material portion of our properties and assets, (viii)
any judgment or claim becoming a lien or encumbrance on any material portion of
our assets, (ix) delisting or suspension of trading of our common stock for more
than 5 consecutive trading days or 8 total trading days, (x) the failure of the
registration statement of which this prospectus is a part being declared
effective by the SEC by May 6, 2002, (xi) a lapse in the effectiveness of the
registration statement for more than 20 trading days during any 12-month period
(subject to exceptions for material transactions), or (xii) a change of control
transaction. A change of control transaction includes the acquisition of more
than 40% of our voting stock in a transaction not approved by our board of
directors, the replacement of more than one-half of the current members of the
board of directors without the approval of such directors, the consolidation or
merger of us where the shareholders prior to such transaction do not own at
least 51% of our voting stock after the transaction or the common stock is no
longer listed on Nasdaq National Market System or a national exchange, the sale
of all or substantially all of our assets, or the execution by us of an
agreement providing for one of the foregoing events. These change of control
provisions may have the effect of discouraging third parties from making a bid
to acquire control of us in a transaction not approved by our board of
directors.



        Description of the Warrants. The warrants are exercisable for a total of
367,590 shares of our common stock at an exercise price of $4.4275 payable in
cash. The warrants are exercisable until November 6, 2004. The number of shares
issuable upon exercise and the exercise price are subject to adjustment in the
event of a stock dividend, a stock split or combination or a reclassification of
our common stock, but otherwise do not have exercise price adjustments.





                                      -5-


                              PLAN OF DISTRIBUTION

        We are registering the shares covered by this prospectus for the selling
shareholders. The selling shareholders and their pledgees, donees, transferees
or other successors in interest may sell the shares in the over-the-counter
market or otherwise, at market prices prevailing at the time of sale, at prices
related to prevailing market prices, or at negotiated prices. In addition, the
shares may be sold by one or more of the following methods:

        -   a block trade in which a broker or dealer so engaged will attempt to
            sell the shares as agent but may position and resell a portion of
            the block, as principal, in order to facilitate the transaction;

        -   purchases by a broker or dealer, as principal, in a market maker
            capacity or otherwise and resale by the broker or dealer for its
            account pursuant to their prospectus;

        -   ordinary brokerage transactions and transactions in which a broker
            solicits purchases;

        -   privately negotiated transactions;

        -   any combination of these methods of sale; or

        -   any other legal method.

        We will pay the costs and fees of registering the shares, but the
selling shareholders will pay any brokerage commissions, discounts or other
expenses relating to the sale of the shares. We have agreed with the selling
shareholders to indemnify each other against certain liabilities, including
liabilities arising under the Securities Act, that relate to statements or
omissions in the registration statement of which this prospectus forms a part.

        Regulation M under the Securities Exchange Act of 1934 provides that
during the period that any person is engaged in the distribution, as so defined
in Regulation M, of our common stock, such person generally may not purchase
shares of our common stock. The selling shareholders are subject to applicable
provisions of the Securities Act and the Securities Exchange Act of 1934 and the
rules and regulations thereunder, including, without limitation, Regulation M,
which provisions may limit the timing of purchases and sales of shares of our
common stock by the selling shareholders. The foregoing may affect the
marketability of our common stock.

        The selling shareholders may negotiate and pay brokers or dealers
commissions, discounts or concessions for their services. In effecting sales,
brokers or dealers engaged by the selling shareholders may allow other brokers
or dealers to participate. However, the selling shareholders and any brokers or
dealers involved in the sale or resale of the shares may qualify as
"underwriters" within the meaning of the Section 2(a)(11) of the Securities Act.
In addition, the brokers' or dealers' commissions, discounts or concessions may
qualify as underwriters' compensation under the Securities Act. If any of the
selling shareholders qualifies as an "underwriter," it will be subject to the
prospectus delivery requirements of section 5(b)(2) of the Securities Act.

        In addition to selling its shares under this prospectus, the selling
shareholders may:

        -   agree to indemnify any broker or dealer or agent against certain
            liabilities related to the selling of the shares, including
            liabilities arising under the Securities Act;

        -   transfer its shares in other ways not involving market makers or
            established trading markets, including directly by gift,
            distribution, or other transfer; or

        -   sell their shares under Rule 144 of the Securities Act rather than
            under this prospectus, if the transaction meets the requirements of
            Rule 144.

        Upon notification by the selling shareholders that any material
arrangement has been entered into with a broker or dealer for the sale of the
shares through a block trade, special offering, exchange distribution or
secondary distribution or a purchase by a broker or dealer, we will file a




                                      -6-


supplement to this prospectus, if required, pursuant to Rule 424(b) under the
Securities Act, disclosing the material terms of the transaction.


                                  LEGAL MATTERS

        For purposes of this offering, Kenneth W. Johnson, our General Counsel,
is giving an opinion on the validity of the common shares. As of the date of
this prospectus, Mr. Johnson held 40,914 shares of our common stock, options to
purchase 270,000 shares of our common stock and warrants to purchase 21,637
shares of our common stock.


                                     EXPERTS

        The financial statements incorporated in this prospectus by reference
from our Annual Report on Form 10-K/A for the year ended December 31, 2000, have
been audited by Deloitte & Touche LLP, independent auditors, as stated in their
report, which is incorporated herein by reference. The statements of assets
acquired and liabilities assumed of the Cray Research business unit of Silicon
Graphics, Inc. as of March 31, 2000, and the related statements of revenue and
direct operating expenses for the years ended June 30, 1998 and 1999, and the
nine month period ended March 31, 2000, incorporated in this prospectus by
reference from Form 8-K/A of Cray Inc. filed on June 16, 2000, have been audited
by Deloitte & Touche LLP, independent auditors, as stated in their report (which
report expresses an unqualified opinion and includes an explanatory paragraph
referring to note 1 which describes the expense allocations by Silicon Graphics,
Inc), which is incorporated herein by reference. These financial statements have
been so incorporated herein by reference in reliance upon the reports of such
firm given upon their authority as experts in accounting and auditing.


                   LIMITATION OF LIABILITY AND INDEMNIFICATION

        Our Restated Articles of Incorporation provide that, to the fullest
extent permitted by the Washington Business Corporation Act, our directors will
not be liable for monetary damages to us or our shareholders, excluding,
however, liability for acts or omissions involving intentional misconduct or
knowing violations of law, illegal distributions or transactions from which the
director receives benefits to which the director is not legally entitled. Our
Restated Bylaws provide that we will indemnify our directors and, by action of
the Board of Directors, may indemnify our officers, employees and other agents
to the fullest extent permitted by applicable law, except for any legal
proceeding that is initiated by such directors, officers, employees or agents
without authorization of the Board of Directors.

        Insofar as indemnification for liabilities arising under the Securities
Act may be permitted to our directors, officers and controlling persons pursuant
to the foregoing provisions, or otherwise, we have been advised that, in the
opinion of the SEC, such indemnification is against public policy as expressed
in the Securities Act and is, therefore, unenforceable.


                      INFORMATION INCORPORATED BY REFERENCE

        The Securities and Exchange Commission allows us to incorporate by
reference our publicly-filed reports into this prospectus, which means that
information included in those reports is considered part of this prospectus.
Information that we file with the Securities and Exchange Commission after the
date of this prospectus will automatically update and supersede the information
contained in this prospectus. We incorporate by reference the following
documents filed with the Securities and Exchange Commission and any future
filings made with the Securities and Exchange Commission under sections 13(a),
13(c), 14 or 15(d) of the Securities Exchange Act of 1934:

        1.   Our annual report on Form 10-K/A for the year ended December 31,
             2000, as filed on September 17, 2001;

        2.   Our quarterly reports on Form 10-Q for the quarters ended March 31,
             2001, June 30, 2001, and September 30, 2001;

        3.   Our definitive proxy statement, as filed with the Securities and
             Exchange Commission on April 9, 2001;


        4.   Our current report on Form 8-K for the event of December 14, 2001,
             as filed on December 18, 2001;





                                      -7-



         5.  Our current report on Form 8-K for the event of November 6, 2001,
             as filed on November 28, 2001;



         6.  Our current report on Form 8-K for the event of October 1, 2001, as
             filed on October 10, 2001;



         7.  Our current report on Form 8-K for the event of May 10, 2001, as
             filed on May 14, 2001;



         8.  Our current report on Form 8-K for the event of April 3, 2001, as
             filed on April 13, 2001;



         9.  Our current report on Form 8-K for the event of February 7, 2001,
             as filed on February 15, 2001;



        10.  Our current report on Form 8-K/A for the event of December 15,
             2000, as filed on July 27, 2001;



        11.  Our current report on Form 8-K for the event of April 3, 2000, as
             filed on April 5, 2000 and amended on June 16, 2000; and



        12.  The description of our common stock as described in our
             registration statement on Form SB-2, registration no. 33-95460-LA,
             including any amendment or report filed for the purpose of updating
             the description, as incorporated by reference in our registration
             statement on Form 8-A, registration no. 0-26820, including the
             amendment on Form 8-A/A.


        We will furnish without charge to you, on written or oral request, a
copy, excluding exhibits, of any or all of the documents incorporated by
reference. You should direct any requests for documents to Investor Relations,
Cray Inc., 411 First Avenue South, Suite 600, Seattle, Washington 98104,
telephone (206) 701-2000.

        The information relating to us contained in this prospectus is not
comprehensive and should be read with the information contained in the
incorporated documents.


                              AVAILABLE INFORMATION

        This prospectus is part of a registration statement on Form S-3 that we
filed with the SEC. Certain information in the registration statement has been
omitted from this prospectus in accordance with SEC rules.

        We file annual, quarterly and special reports and other information with
the SEC. You may read and copy the registration statement and any other document
that we file at the SEC's public reference rooms located at Room 1024, Judiciary
Plaza, 450 Fifth Street N.W., Washington, D.C. 20549; 233 Broadway, New York,
New York 10048; and Citicorp Center, 500 West Madison Street, Suite 1400,
Chicago, Illinois 60661. Please call the SEC at 1-800-SEC-0330 for further
information on the public reference rooms. Our SEC filings are also available to
you free of charge at the SEC's web site at http://www.sec.gov.

        Statements contained in this prospectus as to the contents of any
contract or other document referred to are not necessarily complete. You should
refer to the copy of such contract or other document filed as an exhibit to the
registration statement.




                                      -8-


                                     PART II

                   INFORMATION NOT REQUIRED IN THE PROSPECTUS


Item 14. Other Expenses of Issuance and Distribution.

        We will pay all expenses in connection with the issuance and
distribution of the securities being registered. The following is an itemized
statement of these expenses (all amounts are estimated except for the SEC fees):



                                                                     
        SEC Registration fee.....................................       $  4,286

        Legal fees...............................................       $ 75,000

        Accountant's Fees........................................       $  8,000

        Finder's Fee.............................................       $651,000

        Miscellaneous............................................       $ 11,714
                                                                        --------

        Total....................................................       $750,000
                                                                        ========




Item 15. Indemnification of Officers and Directors.

        Article XII of our Restated Articles of Incorporation and Section 11 of
our Restated Bylaws require indemnification of our directors, officers,
employees and agents to the fullest extent permitted by the Washington Business
Corporation Act (the "Act"). Sections 23B.08.500 through 23B.08.600 of the Act
authorize a court to award, or a corporation's board of directors to grant,
indemnification to directors and officers on terms sufficiently broad to permit
indemnification under certain circumstances for liabilities arising under the
Securities Act.

        Section 23B.08.320 of the Act authorizes a corporation to limit a
director's liability to the corporation or its shareholders for monetary damages
for acts or omissions as a director, except in certain circumstances involving
intentional misconduct, self-dealing or illegal corporate loans or
distributions, or any transaction from which the director personally receives a
benefit in money, property or services to which the director is not legally
entitled. Article XI of our Restated Articles of Incorporation contains
provisions implementing, to the fullest extent permitted by Washington law, such
limitations on a director's liability to us and our shareholders.

Item 16. Exhibits.

        4.1    Convertible Subordinated Debentures and Warrants Purchase
               Agreement dated as of November 6, 2001 between Cray Inc. and the
               selling shareholders(1)

        4.2    Form of 5% Convertible Subordinated Debenture, due November 6,
               2004, issued to the selling shareholders(1)

        4.3    Form of Stock Purchase Warrant, dated November 6, 2001, issued to
               the selling shareholders(1)

        4.4    Registration Rights Agreement dated as of November 6, 2001
               between Cray Inc. and the selling shareholders(1)


        4.5    Amendment No. 1 to the Convertible Subordinated Debentures and
               Warrants Purchase Agreement and Other Transaction Documents,
               dated as of November 15, 2001, between Cray Inc. and the selling
               shareholders(1)



        5      Opinion on Legality(2)



        23     Consent of Deloitte & Touche LLP(3)



        24     Power of Attorney(2)






---------------
(1)  Incorporated by reference to our current report on Form 8-K as filed on
     November 28, 2001


(2)  Previously filed with this registration statement



(3)  Filed with this amendment


Item 17. Undertakings.

        (a)    The undersigned registrant hereby undertakes:

               (1)    To file, during any period in which offers or sales are
                      being made, a post-effective amendment to this
                      Registration Statement

                      (i)    To include any prospectus required by Section
                             10(a)(3) of the Securities Act of 1933;

                      (ii)   To reflect in the prospectus any facts or events
                             arising after the effective date of this
                             Registration Statement (or the most recent
                             post-effective amendment thereof) that,
                             individually or in the aggregate, represent a
                             fundamental change in the information set forth in
                             this Registration Statement; and

                      (iii)  To include any material information with respect to
                             the plan of distribution not previously disclosed
                             in the registration statement or any material
                             change to such information in the registration
                             statement;

                      provided, however, that paragraphs (a)(1)(i) and
                      (a)(1)(ii) do not apply if the information required to be
                      included in a post-effective amendment by those paragraphs
                      is contained in periodic reports filed with or furnished
                      to the Commission by the registrant pursuant to Section 13
                      or Section 15(d) of the Exchange Act that are incorporated
                      by reference in the registration statement;

               (2)    That, for the purpose of determining any liability under
                      the Securities Act, each post-effective amendment shall be
                      deemed to be a new registration statement relating to the
                      securities offered therein, and the offering of such
                      securities at that time shall be deemed to be the initial
                      bona fide offering thereof; and

               (3)    To remove from registration by means of a post-effective
                      amendment any of the securities being registered that
                      remain unsold at the termination of the offering.

        (b)    The undersigned registrant hereby undertakes that, for purposes
               of determining any liability under the Securities Act of 1933,
               each filing of the registrant's annual report pursuant to Section
               13(a) or Section 15(d) of the Securities Exchange Act of 1934
               that is incorporated by reference in the registration statement
               shall be deemed to be a new registration statement relating to
               the securities offered therein, and the offering of such
               securities at that time shall be deemed to be the initial bona
               fide offering thereof.

        (c)    Insofar as indemnification for liabilities arising under the
               Securities Act may be permitted to directors, officers and
               controlling persons of the registrant pursuant to the foregoing
               provisions, or otherwise, the registrant has been advised that in
               the opinion of the Commission such indemnification is against
               public policy as expressed in the Securities Act and is,
               therefore, unenforceable. In the event that a claim for
               indemnification against such liabilities (other than the payment
               by the registrant of expenses incurred or paid by a director,
               officer or controlling person of the registrant in the successful
               defense of any action, suit or proceeding) is asserted by such
               director, officer or controlling person in connection with the
               securities being registered, the registrant will, unless in the
               opinion of its counsel the matter has been settled by controlling
               precedent, submit to a court of appropriate jurisdiction the
               question, whether such indemnification by it is against public
               policy as expressed in the Securities Act and will be governed by
               the final adjudication of such issue.





                                   SIGNATURES


        Pursuant to the requirements of the Securities Act of 1933, as amended,
the registrant certifies that it has reasonable grounds to believe that it meets
all of the requirements for filing on Form S-3 and has duly caused this
Amendment No. 1 to registration statement no. 333-74100 to be signed on its
behalf by the undersigned, thereunto duly authorized, in the City of Seattle,
State of Washington, on January 16, 2002.




                                            CRAY INC.


                                            By:    /s/
                                                --------------------------------
                                                   Kenneth W. Johnson
                                                   General Counsel




        Pursuant to the requirements of the Securities Act of 1933, as amended,
this amendment no. 1 to registration statement no. 333-74100 has been signed by
the following persons in the capacities indicated below on the 16th day of
January, 2002:




Signature and Title
                                      


                 *                                        *
--------------------------------------   ---------------------------------------
James E. Rottsolk, Chairman of the         Daniel J. Evans, Director
Board of Directors

                 *                                        *
--------------------------------------   ---------------------------------------
Burton J. Smith, Director                   Stephen C. Kiely, Director

                 *                                        *
--------------------------------------   ---------------------------------------
Terren S. Peizer, Director                  Kenneth W. Kennedy, Director

                 *                                        *
--------------------------------------   ---------------------------------------
David N. Cutler, Director                   William A. Owens, Director

                 *                                        *
--------------------------------------   ---------------------------------------
Dean D. Thornton, Director                  Michael P. Haydock, President, Chief
                                            Executive Officer and Director
                 *
--------------------------------------
Douglas C. Ralphs, Chief Financial and
Accounting Officer

/s/
--------------------------------------
*Kenneth W. Johnson
 Attorney-in-Fact